algorithm matlab r2023a update 1 Search Results


codex mav plugin  (Akoya Biosciences)
99
Akoya Biosciences codex mav plugin
Codex Mav Plugin, supplied by Akoya Biosciences, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/codex mav plugin/product/Akoya Biosciences
Average 99 stars, based on 1 article reviews
codex mav plugin - by Bioz Stars, 2026-04
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version 9.12.0.1927505 (r2022a) update 1  (MathWorks Inc)
90
MathWorks Inc version 9.12.0.1927505 (r2022a) update 1
Version 9.12.0.1927505 (R2022a) Update 1, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/version 9.12.0.1927505 (r2022a) update 1/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
version 9.12.0.1927505 (r2022a) update 1 - by Bioz Stars, 2026-04
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r2023b update 1  (MathWorks Inc)
90
MathWorks Inc r2023b update 1
R2023b Update 1, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/r2023b update 1/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
r2023b update 1 - by Bioz Stars, 2026-04
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software r2023a update 1  (MathWorks Inc)
90
MathWorks Inc software r2023a update 1
Software R2023a Update 1, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/software r2023a update 1/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
software r2023a update 1 - by Bioz Stars, 2026-04
90/100 stars
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9 12 0 1927505 r2022a update 1  (MathWorks Inc)
93
MathWorks Inc 9 12 0 1927505 r2022a update 1
9 12 0 1927505 R2022a Update 1, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/9 12 0 1927505 r2022a update 1/product/MathWorks Inc
Average 93 stars, based on 1 article reviews
9 12 0 1927505 r2022a update 1 - by Bioz Stars, 2026-04
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software r2024a update 1 (24.1.0.2568132)  (MathWorks Inc)
90
MathWorks Inc software r2024a update 1 (24.1.0.2568132)
Software R2024a Update 1 (24.1.0.2568132), supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/software r2024a update 1 (24.1.0.2568132)/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
software r2024a update 1 (24.1.0.2568132) - by Bioz Stars, 2026-04
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fmincon function  (MathWorks Inc)
90
MathWorks Inc fmincon function
Fmincon Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fmincon function/product/MathWorks Inc
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fmincon function - by Bioz Stars, 2026-04
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automated retinal image analyzer aria v1-09-12-11  (MathWorks Inc)
90
MathWorks Inc automated retinal image analyzer aria v1-09-12-11
<t>Retinal</t> vessels analysis. The ARIA (automatic retinal <t>image</t> <t>analyzer)</t> software allowed to perform a semi-automatic assessment of retinal vessels diameter with an area of interest around the optic nerve area. For the purpose of the study, the main vessels within 0·5 and 1 disk diameter around the optic nerve head were automatically segmented by the software. The operator chose the four main veins and arteries and averaged their diameters automatically calculated by the software to obtain the mean arteries diameter (MAV) and the mean veins diameter (MVD), respectively.
Automated Retinal Image Analyzer Aria V1 09 12 11, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automated retinal image analyzer aria v1-09-12-11/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
automated retinal image analyzer aria v1-09-12-11 - by Bioz Stars, 2026-04
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cytomap  (MathWorks Inc)
90
MathWorks Inc cytomap
Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using <t>CytoMAP.</t> (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .
Cytomap, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/cytomap/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
cytomap - by Bioz Stars, 2026-04
90/100 stars
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zemax opticstudio software  (ZEMAX Development Corporation)
90
ZEMAX Development Corporation zemax opticstudio software
Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using <t>CytoMAP.</t> (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .
Zemax Opticstudio Software, supplied by ZEMAX Development Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/zemax opticstudio software/product/ZEMAX Development Corporation
Average 90 stars, based on 1 article reviews
zemax opticstudio software - by Bioz Stars, 2026-04
90/100 stars
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r2022a update 9.12.0.1927505  (MathWorks Inc)
90
MathWorks Inc r2022a update 9.12.0.1927505
Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using <t>CytoMAP.</t> (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .
R2022a Update 9.12.0.1927505, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/r2022a update 9.12.0.1927505/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
r2022a update 9.12.0.1927505 - by Bioz Stars, 2026-04
90/100 stars
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matlab r2021a  (MathWorks Inc)
90
MathWorks Inc matlab r2021a
Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using <t>CytoMAP.</t> (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .
Matlab R2021a, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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matlab r2021a - by Bioz Stars, 2026-04
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Image Search Results


Retinal vessels analysis. The ARIA (automatic retinal image analyzer) software allowed to perform a semi-automatic assessment of retinal vessels diameter with an area of interest around the optic nerve area. For the purpose of the study, the main vessels within 0·5 and 1 disk diameter around the optic nerve head were automatically segmented by the software. The operator chose the four main veins and arteries and averaged their diameters automatically calculated by the software to obtain the mean arteries diameter (MAV) and the mean veins diameter (MVD), respectively.

Journal: EClinicalMedicine

Article Title: Retinal findings in patients with COVID-19: Results from the SERPICO-19 study

doi: 10.1016/j.eclinm.2020.100550

Figure Lengend Snippet: Retinal vessels analysis. The ARIA (automatic retinal image analyzer) software allowed to perform a semi-automatic assessment of retinal vessels diameter with an area of interest around the optic nerve area. For the purpose of the study, the main vessels within 0·5 and 1 disk diameter around the optic nerve head were automatically segmented by the software. The operator chose the four main veins and arteries and averaged their diameters automatically calculated by the software to obtain the mean arteries diameter (MAV) and the mean veins diameter (MVD), respectively.

Article Snippet: In brief, retinal images were acquired and processed using the Automated Retinal Image analyzer (ARIA, V1-09-12-11), an opensource software developed on the MATLAB platform (MATLAB R2020a – update 1 (9.8.0.1359463)) .

Techniques: Software

Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using CytoMAP. (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .

Journal: Frontiers in Immunology

Article Title: Type 2 and type 17 effector cells are increased in the duodenal mucosa but not peripheral blood of patients with functional dyspepsia

doi: 10.3389/fimmu.2022.1051632

Figure Lengend Snippet: Akoya Biosciences Phenocycler investigation of lymphocytes in FD compared to control. (A) A duodenal biopsy from 1x control and 1x FD patient were stained using the Akoya Biosciences Phenocycler platform (top images scale bar = 200µM, bottom images = 100µM). The expression of CD3e, CD4, CD8, CD20CD44, CD45RO, and DAPI as the nuclear marker are shown. 10x and 20x magnification. (B) Heatmap demonstrating the fold change expression of each marker in each region generated by clustering of the DAPI positive population using CytoMAP. (C) The prevalence of each clustered region in the control sample compared to the FD sample. (D) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) in the FD patient compared to the control. (E) t-SNE plot of lymphocyte-associated markers (CD3e, CD4, CD8, CD20, CD44, CD45RO) colored by clustered region in the control and FD sample. (F) t-SNE plots of memory lymphocytes (CD45RO + CD4 + /CD8 + ) MFI intensity in control and FD sample, (G) t-SNE plots of activated lymphocytes (CD44 + CD4 + /CD8 + ) MFI intensity in control and FD sample. Magenta = positive cells, grey = negative cells. n=1 control, n=1 FD duodenal biopsy. .

Article Snippet: Using the CODEX MAV plugin, all DAPI positive cells in the entire biopsy, antibody mean fluorescent intensity (MFI) and position (X, Y) data were imported to CytoMAP ( ) in MATLAB (version R2022a update 1, MathWorks, Massachusetts, USA).

Techniques: Control, Staining, Expressing, Marker, Generated